1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttcagctgattttttttaggtttaaaaacatttacagctactgcattgatactgttatgctatatttcttatcatcgttcttttttttcccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAGCGGCAAAGGTCACTGGAATGCTTTTGGAGATGGATCAGACTGAGGTCC
species | Zea mays |
transcript | GRMZM2G352129_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|211211600|gb|FL477383.1|FL477383
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|33093322|gb|CF053316.1|CF053316
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATEST: gi|32921406|gb|CF026218.1|CF026218
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTAT
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|60338172|gb|DN205145.1|DN205145
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|16925635|gb|BM078703.1|BM078703
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|32835854|gb|CD975532.1|CD975532
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|149111793|gb|EE190946.2|EE190946
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTGGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|211301855|gb|FL439769.1|FL439769
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|161587791|gb|EY961133.1|EY961133
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTAGAAAACCTATACCCACTGGTTGAGCAACEST: gi|5055538|gb|AI734425.1|AI734425
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGT-GAAAACCTATACCCACTGGTTGAGCAAC
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|148982727|gb|EE028545.2|EE028545
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|32840038|gb|CD979719.1|CD979719
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|149058766|gb|EE156786.2|EE156786
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|32921610|gb|CF026422.1|CF026422
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAEST: gi|19822351|gb|BQ048375.1|BQ048375
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
EST: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACG ATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
genomic: GGACTCTGACTTCTGCCCTTGCAAATGCTAATCCTGAACAGCAAAGAACGgtatgtccct ... ccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAA
attgatactgttatgctatatttcttatcatcgttcttttttttcccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAGCGGCAAAGGTCACTGGAATGCTTTTGGAGATGGATCAGACTGAGGTCC
cattgat putative branch site (score: 397)
tatttcttatcatcgt putative PPT
tatatttcttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcagctgattttttttaggtttaaaaacatttacagctactgcattgatactgttatgctatatttcttatcatcgttcttttttttcccccatctagATCCTTGGTGAAAACCTATACCCACTGGTTGAGCAACTGGAACCAAACCAAGCGGCAAAGGTCACTGGAATGCTTTTGGAGATGGATCAGACTGAGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
cttcagc
- - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - - - gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgct