1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacttgatcatcttgcaggttccatagtttacattgtcatccaagaataatcaacttggtttatgacttattattttattttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCATTTGGTACCATTCTCTCATGTAAGGTAGCCATGGATGAAGGAGGCCAAT
species | Zea mays |
transcript | GRMZM2G352129_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|148930466|gb|EE285000.2|EE285000
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|32823829|gb|CD963551.1|CD963551
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: GATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCGEST: gi|149111794|gb|EE190947.2|EE190947
genomic: GATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|78083519|gb|DV511912.1|DV511912
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|30031639|gb|CB833490.1|CB833490
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|31354228|gb|CD438585.1|CD438585
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCGEST: gi|71437807|gb|DR818857.1|DR818857
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|30705721|gb|CD058894.1|CD058894
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCAEST: gi|211106096|gb|FL230498.1|FL230498
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACNAGATGATAGACAATAAATCCCTTCATGAGACEST: gi|32823915|gb|CD963637.1|CD963637
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGAC
EST: GATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCGEST: gi|30307180|gb|CD001853.1|CD001853
genomic: GATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
EST: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAG AATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
genomic: ACCGTGATCCAAGTAGCCGCAGGAGTGGATCTGCTAACATTTTCATAAAGgtacttgatc ... ttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCA
gtcatccaagaataatcaacttggtttatgacttattattttattttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCATTTGGTACCATTCTCTCATGTAAGGTAGCCATGGATGAAGGAGGCCAAT
cttattattttatttt CT-rich tract
ttggtttatgacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgatcatcttgcaggttccatagtttacattgtcatccaagaataatcaacttggtttatgacttattattttattttttctccagAATCTTGACAAGATGATAGACAATAAATCCCTTCATGAGACCTTTTCTTCATTTGGTACCATTCTCTCATGTAAGGTAGCCATGGATGAAGGAGGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG