1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTAACTGAAATGAATGGCAAAATGATATCTGGAAAACCATTGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcctcaaaccagctgaatttatgttattacacttgtgctaatatcaaatgtgaaaaatagcagagtggttactatagatttggtacatagcag...
species | Zea mays |
transcript | GRMZM2G352129_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|32850911|gb|CD990592.1|CD990592
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|211205761|gb|FL339666.1|FL339666
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|32929766|gb|CF034578.1|CF034578
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCACAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTAEST: gi|211182327|gb|FL049124.1|FL049124
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTA
EST: T-TATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|32928646|gb|CF033458.1|CF033458
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCACAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTAEST: gi|211193131|gb|FL329966.1|FL329966
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTA
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|101391361|gb|EB817615.1|EB817615
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGGTGTACCAATGACACCCACTCTAGCCEST: gi|211157245|gb|FL334278.1|FL334278
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTARCCEST: gi|211461945|gb|FL313813.1|FL313813
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|33097147|gb|CF057107.1|CF057107
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGCGCAGTGCATAGAATATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|32848176|gb|CD987857.1|CD987857
genomic: TGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCACAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTEST: gi|211437282|gb|FL309165.1|FL309165
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGT
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCCEST: gi|13490826|gb|BG517590.1|BG517590
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTEST: gi|211179931|gb|FL049122.1|FL049122
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACT
EST: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAG GCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
genomic: TGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcc ... cattacccagGCACAGTTTTCTCAGATGCGCCCTGCTGTACCAATGACACCCACTCTAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAACTGAAATGAATGGCAAAATGATATCTGGAAAACCATTGTATGTTGCATTTGCGCAGCGCAAAGAAGATAGAAAAGCGATGTTGCAGgcaagtgtcctcaaaccagctgaatttatgttattacacttgtgctaatatcaaatgtgaaaaatagcagagtggttactatagatttggtacatagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaata