1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatgctagtcctgtctgttcatgttgcatgaggcattttagttatgttagctaatgtgctgaactaaatggatattgatggtatgtgcactttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTCCTCATATGCCAAATTATTTTGTTCCAGTTGTCCAACACCAACAGGGCC
species | Zea mays |
transcript | GRMZM2G352129_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAG CCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGNGGGTEST: gi|33093322|gb|CF053316.1|CF053316
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCAGCTATGATACCCCCTCAG CCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTEST: gi|20301270|gb|BQ164213.1|BQ164213
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
EST: CTCAGCTACTCTTCTATGGACAAGCGCCACCAGCTATGATACCCCCTCAG CCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTEST: gi|211182327|gb|FL049124.1|FL049124
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAG CCAGTATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTEST: gi|101391361|gb|EB817615.1|EB817615
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAG CCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTEST: gi|211461945|gb|FL313813.1|FL313813
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAG CCAGGATTTGGTTTCEST: gi|33097147|gb|CF057107.1|CF057107
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTC
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCAGCTATGATACCCCCTCAG CCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTEST: gi|211179931|gb|FL049122.1|FL049122
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
EST: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAG CCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGC-TGGGGGT
genomic: CTCAGCAACTCTTCTATGGACAAGCGCCACCTGCTATGATACCCCCTCAGgtacctatga ... tttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGT
gttagctaatgtgctgaactaaatggatattgatggtatgtgcactttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTCCTCATATGCCAAATTATTTTGTTCCAGTTGTCCAACACCAACAGGGCC
cactttcttcc CT-rich tract
aactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgctagtcctgtctgttcatgttgcatgaggcattttagttatgttagctaatgtgctgaactaaatggatattgatggtatgtgcactttcttccagCCAGGATTTGGTTTCCAGCAACAACTTGTTCCAGGCATGAGGCCTGGGGGTCCTCATATGCCAAATTATTTTGTTCCAGTTGTCCAACACCAACAGGGCC
- tgctagt
- - - - - - - - gttcatg
- - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc