1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTTGTCCAACACCAACAGGGCCAACAGGGTCCACGCCCAGGTATTAGGCGTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttccatcaaatttccactgttatactgaggttgggtggttagggtgctacttttagtggaaattggttaacatggtaggacatgtgattcacttacattgttggccagttgttctgtcctttgattggtagagtttgggcttttgttccatgggggaagtgaagtgatgtatcttgtcatgattctcag
species | Zea mays |
transcript | GRMZM2G352129_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCTGGAGCCCCAGG-TCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCCAAGAG-ACGGATGTACEST: gi|33093322|gb|CF053316.1|CF053316
genomic: TGGAGCTGGAGCCC-AGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCC-AAGAGGACGGATGTAC
EST: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCAAGAGGACGAATGTACCGTTACCCAACTGGTCGCAACATGCCTEST: gi|20301270|gb|BQ164213.1|BQ164213
genomic: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
EST: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCAAGAGGACGAATGTACCGCTACCCAACTGGTCGCAACATGCCTEST: gi|60338172|gb|DN205145.1|DN205145
genomic: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
EST: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCTEST: gi|101391361|gb|EB817615.1|EB817615
genomic: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
EST: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGEST: gi|33097147|gb|CF057107.1|CF057107
genomic: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTG
EST: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCAAGAGGACGAATGTACCGTTACCCAACTGGTCGCAACATGCCTEST: gi|149058766|gb|EE156786.2|EE156786
genomic: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
EST: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAG ATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
genomic: GTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttcca ... tgattctcagATTGTTCCAAGAGGACGGATGTACCGTTACCCAACTGGTCGCAACATGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGTCCAACACCAACAGGGCCAACAGGGTCCACGCCCAGGTATTAGGCGTGGAGCTGGAGCCCAGGGTCAGCAACCTGTGCCACCATTTCAGCAGCAGgtattttccatcaaatttccactgttatactgaggttgggtggttagggtgctacttttagtggaaattggttaacatggtaggacatgtgattcacttacattgttggccagttgttctgtcctttgattggtagagtttgggcttttgttccatgggggaagtgaagtgatgtatcttgtcatgattctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA