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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattccaattccccatttgtaagaaatttgccgagcaaagaatacatgtgatgtgtttcttatgtttatgttttggttcagAATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTACTTACAAGTGACAACAGTGGTGAATTTAATAACATTCATGTTGTTCTTGC

Basic information

species Zea mays
transcript GRMZM2G180732_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180732_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g43520.2 (Oryza sativa), 3'ss of exon 8
------------------------------------------gtaatat-tccaattccccatttgtaagaaatttgccgagcaaag-aatacatgtgatgtgtttcttatgtttatgttttggttcagAATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTACTTACAAGTGACAACAGTGGTGAATTTAATAACATTCATGTTGTTCTTGC
                                            | |   |   ||  |  |||     | | | |     |  |    ||||    | |    |  |||   | |||||| ||| |||||||||||||||||||||||||| | ||||||||||| || ||| |||| ||||||||||  |||||||       ||| || |||||||||||||||||
gtatattcccaactcctcgcccctagaatttctaccaagctaaaagtgcatatgatgtcttattccagtggattgtaatatgttatctgatactcacggtacaataattactgtcatgtttgggtacagAATTCACAACAATGGCTGGCAGGCGTCTACGTGATGCTGTGAAAACTGTTCTTACAAGTGGAAACAGTGAATTTGATAAAAATATTCATGTTGTTCTTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211014109|gb|FL390335.1|FL390335
EST:     AATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTACCTGGAG                         AATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTAC
genomic: AATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTCCCTGGAGgtaatattcc ... tttggttcagAATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTAC
EST: gi|67039587|gb|CO465842.1|CO465842
EST:     AATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTTCCTGGAG                         AATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTAC
genomic: AATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTCCCTGGAGgtaatattcc ... tttggttcagAATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccgagcaaagaatacatgtgatgtgtttcttatgtttatgttttggttcagAATTCACAACAATGGCTGGCAGGAGGCTACGTGATGCCGTCAAAGCTGTACTTACAAGTGACAACAGTGGTGAATTTAATAACATTCATGTTGTTCTTGC
                                 ttatgtttatgtttt  TA-rich tract