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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCAGCTCATGTAAATCACGATGGTTTGGAATCTTCACACATGACCTCTCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAAgtatgttccatgctctgcatatattttgtatcgaaatgtaatgttttaggtcttgctgaactactctctgtacaattgttttttcgtcag

Basic information

species Zea mays
transcript GRMZM2G180732_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180732_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g43520.2 (Oryza sativa), 5'ss of exon 4
CAGGCAGCTCATGTAAATCACGATGGTTTGGAATCTTCACACATGACCTCTCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAAgtatgttcc--------atgctctgc-atatattt-tgtatcgaaatgtaatgttttaggtcttgc-tgaactact-ctctgtacaattgttttttcgtcag
||| ||||||||| ||||   |||| ||||  |||||  |||| ||| |||  ||||||  | ||||| ||  | ||||||||||||||||||||||||||||||  ||        |||| |    || | ||    |||     || ||  | || |||| ||| ||||||  |  | | | |||||| | ||  |    
CAGTCAGCTCATGCAAATTCTGATGATTTGAGATCTTTGCACAAGACATCTGTACTTCCTCGGAGAGTTTCTACTATAATTCCTGAACCAAATGAGATAAgtatgaacctgaaccatatgccccttgatctgttcacatatatcggtgaaacatgttgggtcatgcctgaacttttattttcttcaattgctgttcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353425|gb|CD437782.1|CD437782
EST:     ACCAATTGAGATAA                         CTGATGACTTACTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC
genomic: ACCAAATGAGATAAgtatgttcca ... ttttcgtcagCTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC
EST: gi|71426638|gb|DR807688.1|DR807688
EST:     TCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAA                         CTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC
genomic: TCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAAgtatgttcca ... ttttcgtcagCTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC
EST: gi|31360352|gb|CD444709.1|CD444709
EST:     TCGACTTCCGAGAAGAGTCTCACCAATAATTCCTGAACCAAATGAGATAA                         CTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC
genomic: TCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAAgtatgttcca ... ttttcgtcagCTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC
EST: gi|211192367|gb|FL184207.1|FL184207
EST:     TCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAA                         CTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCANGTGGACGGC
genomic: TCGACTTCCGAGAAGAGTCTCCCCAATAATTCCTGAACCAAATGAGATAAgtatgttcca ... ttttcgtcagCTGATGACTTAGTACAATTGGCGTCATCCTACGAAGCCTCAGGTGGACGGC