1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCAGCAACTGAATCATCCGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGGgtgagttttggcttcccctcttcctttcgagtcctggcctgccctcgtccttgctctattttcccccgatttggtgctaattgggtgcgcaaatcagtga...
species | Zea mays |
transcript | GRMZM2G180732_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGG CCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGATEST: gi|101387362|gb|EB815697.1|EB815697
genomic: GGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGGgtgagttttg ... tcttttgcagCCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGAT
EST: AATCATCCGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGG CCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGATEST: gi|13198512|gb|BG354358.1|BG354358
genomic: AATCATCCGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGGgtgagttttg ... tcttttgcagCCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGAT
EST: GGGAGGAGGGATTTTGCCGATCACGG CCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGATEST: gi|74240745|gb|DT648659.1|DT648659
genomic: GGGAGGAGGGATTTTGCCGATCACGGgtgagttttg ... tcttttgcagCCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGAT
EST: AATCATCCGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGG CCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGATEST: gi|71768559|gb|DR966496.1|DR966496
genomic: AATCATCCGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGGgtgagttttg ... tcttttgcagCCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGAT
EST: CGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGG CCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGAT
genomic: CGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGGgtgagttttg ... tcttttgcagCCTGCAGTCAATTTGTCAGTTTATTGAGACATCCAACTTGCATGAGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGCAACTGAATCATCCGAGGAAGGAGGGTGGAGGGAGGAGGGATTTTGCCGATCACGGgtgagttttggcttcccctcttcctttcgagtcctggcctgccctcgtccttgctctattttcccccgatttggtgctaattgggtgcgcaaatcagtga
- - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccga