1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGCTGAGCCTAACGGCAAGCGTGTCGTGTTTGTAAATCTTGATGCTTGCATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtgatcactcttgaatcttatatcagaaaattgcctctctccctctctctgtttgatcatatatttgtatagcctgatccatcatactttgcac...
species | Zea mays |
transcript | GRMZM2G180732_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211189959|gb|FL184194.1|FL184194
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211189960|gb|FL184195.1|FL184195
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|71323344|gb|DR798328.1|DR798328
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211192371|gb|FL184211.1|FL184211
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGANAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211192365|gb|FL184205.1|FL184205
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211192367|gb|FL184207.1|FL184207
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: TGCTTGAAAGACTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211189962|gb|FL184197.1|FL184197
genomic: TGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211189967|gb|FL184202.1|FL184202
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|211189964|gb|FL184199.1|FL184199
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|74240745|gb|DT648659.1|DT648659
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATACEST: gi|31363574|gb|CD447931.1|CD447931
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
EST: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGGCTTAAAGCAAG GTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
genomic: ATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtga ... aatttggcagGTATGGAGATCTTTATAATGAGAATAATGTGGCTATCAGTGGAATCCATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGAGCCTAACGGCAAGCGTGTCGTGTTTGTAAATCTTGATGCTTGCATGGCATCACAGCTTGTTACTATAAAGGTGCTTGAAAGACTTAAAGCAAGgtaagagtgatcactcttgaatcttatatcagaaaattgcctctctccctctctctgtttgatcatatatttgtatagcctgatccatcatactttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG