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TTTGTTCGCCAATCATTTGATGTGATTGTCAATGGAATTGAGCAATGCATTGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaattatgtctgctttctgggacaattagattttctcaaacactaccgaaataatttagcattttttaaatccattcagttatcctctaatttaa...
species | Zea mays |
transcript | GRMZM2G180732_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGEST: gi|211298319|gb|FL250320.1|FL250320
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCG
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATACCTAAATAEST: gi|211189959|gb|FL184194.1|FL184194
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATACCTAAATAEST: gi|211189960|gb|FL184195.1|FL184195
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATAEST: gi|71323344|gb|DR798328.1|DR798328
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATAEST: gi|211298318|gb|FL250319.1|FL250319
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATACCTAAATAEST: gi|211192371|gb|FL184211.1|FL184211
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCANCCCAAGTGCATACCTAAATAEST: gi|71426638|gb|DR807688.1|DR807688
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATAEST: gi|211192367|gb|FL184207.1|FL184207
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATAEST: gi|211189962|gb|FL184197.1|FL184197
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATACCTAAATAEST: gi|211189967|gb|FL184202.1|FL184202
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATACCTAAATAEST: gi|211189964|gb|FL184199.1|FL184199
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACATCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATACCTAAATAEST: gi|74240745|gb|DT648659.1|DT648659
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATAEST: gi|31363574|gb|CD447931.1|CD447931
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
EST: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAG GTGACCTCCTTGATGCCGGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
genomic: TGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaatt ... tgattttcagGTGACCTCCTTGATGCCAGTGTGAATCGCAGCCCAAGTGCATATCTAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTTCGCCAATCATTTGATGTGATTGTCAATGGAATTGAGCAATGCATTGTTGAAGCTCACAACAATCTCCACCCTGGGAAAATCTATGTGAACAAAGgtataaaattatgtctgctttctgggacaattagattttctcaaacactaccgaaataatttagcattttttaaatccattcagttatcctctaatttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA