1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatcattttcatttatgttcctggaaaaaatggatcattttgtttccttgaatacacaaggaatatgtacattttgcacatgactagttggcgttgtttgcatgcagcctactctacagtttgactaattcctaataacttgtgccaag
species | Zea mays |
transcript | GRMZM2G164562_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|60357187|gb|DN224160.1|DN224160
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|78089033|gb|DV517426.1|DV517426
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|32862616|gb|CF002298.1|CF002298
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|7216715|gb|AW562837.1|AW562837
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTNCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|40335508|gb|CK369578.1|CK369578
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|213172541|gb|FM189510.1|FM189510
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|32808278|gb|CD960512.1|CD960512
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGACGAGTTCTATATGGATGAGGEST: gi|113701263|gb|EE678767.1|EE678767
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|32808708|gb|CD960942.1|CD960942
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|18659504|gb|BM500373.1|BM500373
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|148963944|gb|EE015066.2|EE015066
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTTTATATGGATGAGGEST: gi|37385128|gb|CF629683.1|CF629683
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|211540749|gb|FL105307.1|FL105307
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: AGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|60352524|gb|DN219497.1|DN219497
genomic: AGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|67042195|gb|CO468450.1|CO468450
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|32793479|gb|CD945715.1|CD945715
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGATG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGGEST: gi|5901142|gb|AW042242.1|AW042242
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
EST: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTG GTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
genomic: GCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatc ... ttgtgccaagGTACGGACTTTACTGGAAGTGAGCATAATGATGAGTTCTATATGGATGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATTGGCAGTGGGTTCGCTGgtaaggaatcattttcatttatgttcctggaaaaaatggatcattttgtttccttgaatacacaaggaatatgtacattttgcacatgactagttggcgttgtttgcatgcagcctactctacagtttgactaattcctaataacttgtgccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG