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...agagtaataaactttccttttgcattttcatttacactgcaaaaaggcagtccctccctctcccttttaatcctgatggaagaacatcatctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAGTTGATTATGAGACTGTAACCTTGGAACAT
species | Zea mays |
transcript | GRMZM2G164562_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|149070137|gb|EE158538.2|EE158538
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|76020355|gb|DT947525.1|DT947525
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGEST: gi|149015775|gb|EE045474.2|EE045474
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTG
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|71442663|gb|DR823713.1|DR823713
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|148963945|gb|EE015067.2|EE015067
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAGATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|28390366|gb|CB250180.1|CB250180
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGEST: gi|60352524|gb|DN219497.1|DN219497
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTG
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|78089034|gb|DV517427.1|DV517427
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAEST: gi|148966882|gb|EE018003.2|EE018003
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
EST: CTGCAGGAGCTCTTGCAA-GAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTEST: gi|67042195|gb|CO468450.1|CO468450
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTT
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAG ATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTAAAGCTCAAATCAGGAGTGGAGgtgtgaccct ... ctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCA
ggcagtccctccctctcccttttaatcctgatggaagaacatcatctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAGTTGATTATGAGACTGTAACCTTGGAACAT
tcctgat putative branch site (score: 429)
ttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagtaataaactttccttttgcattttcatttacactgcaaaaaggcagtccctccctctcccttttaatcctgatggaagaacatcatctacatgcagATCTTGGCATTTGTTTCTAAAGTGCACCAAGTCGTACTTCCAGAAGATGCAGTTGATTATGAGACTGTAACCTTGGAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - -ttgcatt
- - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca