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AGAATATGCAGAGAAGATGATTGCTGCCATTGATACGGTACGAGTTAGAGGAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttgaagctctatggttatttttatttgttttagttttgattgcatcacatcctttaaggttgatcagcaacaacaaagtcttttagggacttc...
species | Zea mays |
transcript | GRMZM2G164562_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTEST: gi|211540751|gb|FL105309.1|FL105309
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTT
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|32929391|gb|CF034203.1|CF034203
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAGCGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|60357187|gb|DN224160.1|DN224160
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: CATGCATTGCAAGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|40335508|gb|CK369578.1|CK369578
genomic: CATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|213172541|gb|FM189510.1|FM189510
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAACGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|32808278|gb|CD960512.1|CD960512
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAACGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|113701263|gb|EE678767.1|EE678767
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAGGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|32808708|gb|CD960942.1|CD960942
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAACGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|18659504|gb|BM500373.1|BM500373
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAACGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|37385128|gb|CF629683.1|CF629683
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: AAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|60352524|gb|DN219497.1|DN219497
genomic: AAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|32929474|gb|CF034286.1|CF034286
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAACGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|67042195|gb|CO468450.1|CO468450
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGT GGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCCEST: gi|32793479|gb|CD945715.1|CD945715
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
EST: GAGATTCAATTGGTGGAGTCGTCACATGCATTGCAAGAAACGTTCCTCGT GGTCTTGGCTCTACTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
genomic: GAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttg ... caatttgtagGGTCTTGGCTCTCCTGTTTTTGACAAACTTGAAGCTGAACTGGCAAAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATATGCAGAGAAGATGATTGCTGCCATTGATACGGTACGAGTTAGAGGAGATTCAATTGGTGGGGTCGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtgttgaagctctatggttatttttatttgttttagttttgattgcatcacatcctttaaggttgatcagcaacaacaaagtcttttagggacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacaa