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gttttgccattaatatgctactttgtctatagtttggctaatctctttctgctaacatccctatattgcttttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG
species | Zea mays |
transcript | GRMZM2G158627_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGEST: gi|40334151|gb|CK368221.1|CK368221
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGEST: gi|74240586|gb|DT648500.1|DT648500
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGEST: gi|45568479|gb|CK986083.1|CK986083
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG GCGACGTNTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGEST: gi|211108629|gb|FL325826.1|FL325826
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
EST: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG GCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
genomic: CAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATGgttttgccat ... tttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAG
tctatagtttggctaatctctttctgctaacatccctatattgcttttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG
tgctaac putative branch site (score: 79)
ttgctttt putative PPT
ttttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgccattaatatgctactttgtctatagtttggctaatctctttctgctaacatccctatattgcttttgttatagGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA