1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cagtgcaacatgtttctattagatgtcacaaggtgcttatttcagttttctgcatcttcaccatttctacaaattttacttgtagacttcttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG
species | Zea mays |
transcript | GRMZM2G158627_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATEST: gi|40334151|gb|CK368221.1|CK368221
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATEST: gi|74240586|gb|DT648500.1|DT648500
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATEST: gi|45568479|gb|CK986083.1|CK986083
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: GTGGAGAGATTTCATTCTCCGGTCATTGC-TGAAGCTAGATGATATTAAG G-TGTTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAEST: gi|26456279|gb|CA827862.1|CA827862
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTG-TCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGA
EST: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACATGTCGGAGAAGGAGATTGATEST: gi|211108629|gb|FL325826.1|FL325826
genomic: GTGGAGAGATTTCATTCTTCGGTCATTGCTTGAAGCTAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
EST: TAGATGATATTAAG GTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
genomic: TAGATGATATTAAGgtaatgttcc ... ttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGAT
ttttctgcatcttcaccatttctacaaattttacttgtagacttcttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG
cttcttattttt CT-rich tract
atttctacaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgcaacatgtttctattagatgtcacaaggtgcttatttcagttttctgcatcttcaccatttctacaaattttacttgtagacttcttatttttagGTTGTCCGACAATTCAAGCGTCCTGAAAACGTGTCGGAGAAGGAGATTGATGCTGCAGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -tgcaaca
- - - - - tgtttct
- - - - - - - - - - - - - - - -ggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg