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...ttatttctatacctttaaatatttaaagatcccaatcatgcacacttttttttgtttcttctccagttgcttataagatacttgaattatgaaaatgcagGTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTATCAAGTAAATCTGAGGAGA
species | Zea mays |
transcript | GRMZM2G158627_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACGTACTGGAGAAGAAGACTGCAGAATTTCTCTCTCAACACTCTACCAT GTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACTEST: gi|87156879|gb|DY401668.1|DY401668
genomic: GACGTACTGGAGAAGAAGACTGCAGAATTTCTCTCTCAACACTCTACCATgtaagtatat ... gaaaatgcagGTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACT
EST: GACGTACTGGAGAAGAAGACTGCAGAATTTCTCTCTCAACACTCTACCAT GTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACTEST: gi|26559569|gb|CA831804.1|CA831804
genomic: GACGTACTGGAGAAGAAGACTGCAGAATTTCTCTCTCAACACTCTACCATgtaagtatat ... gaaaatgcagGTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACT
EST: GACGTACTGGAGAAGAAGACTGCAGAATTTCTCTCTCAACACTCTACCAT GTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACT
genomic: GACGTACTGGAGAAGAAGACTGCAGAATTTCTCTCTCAACACTCTACCATgtaagtatat ... gaaaatgcagGTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACT
ttttttttgtttcttctccagttgcttataagatacttgaattatgaaaatgcagGTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTATCAAGTAAATCTGAGGAGA
ttgaattatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttctatacctttaaatatttaaagatcccaatcatgcacacttttttttgtttcttctccagttgcttataagatacttgaattatgaaaatgcagGTTCTCGTAACAACTTGCGTGGTGATGGCTCCATTTACACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTATCAAGTAAATCTGAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgaat