1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTATCAAGTAAATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttcatctaaacattccattttgtgttattttagcagaatggcttctgacttaaatagttaaatgttcgattgattttgttacattgccag
species | Zea mays |
transcript | GRMZM2G158627_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAG AGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATEST: gi|87156879|gb|DY401668.1|DY401668
genomic: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttc ... acattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
EST: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAG AGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGATEST: gi|26559569|gb|CA831804.1|CA831804
genomic: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttc ... acattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
EST: AATCTGAGGAGAGCCTTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAG AGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
genomic: AATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttc ... acattgccagAGAGATGAGCGTGTTGAGCAAAGTGTAAATAGGATGGTGACCATCATTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTATCAAGTAAATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaattgttcatctaaacattccattttgtgttattttagcagaatggcttctgacttaaatagttaaatgttcgattgattttgttacattgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA