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...attaaattttttcataacattttaaaataaaagttggaaaaatgtacattgcatttagtagcattcagttgtgtcctgtggtgactgctttgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG
species | Zea mays |
transcript | GRMZM2G158627_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACACCACTCAA GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGEST: gi|22715593|gb|BU197851.1|BU197851
genomic: AACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAA GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGEST: gi|74240586|gb|DT648500.1|DT648500
genomic: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: CTCTCAAAACACCACTCAA GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGEST: gi|87156879|gb|DY401668.1|DY401668
genomic: CTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAA GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGEST: gi|26559569|gb|CA831804.1|CA831804
genomic: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
EST: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAA GGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
genomic: GCACGTAATATTCGTGAGCGGCATAACAAAGCTCTCAAAACACCACTCAAgtatgtctag ... tgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGG
acattgcatttagtagcattcagttgtgtcctgtggtgactgctttgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG
ctgcttt CT-rich tract
atttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaattttttcataacattttaaaataaaagttggaaaaatgtacattgcatttagtagcattcagttgtgtcctgtggtgactgctttgagtttcagGGAGATGGTGGTTGTGCATCCAGACAATGACTTTCTTGAAGACATAACTGGTAAACTAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - gaaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgc