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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagtcaacgccgtatgctttcttccttttcagaaaaaaaaaactactcctttgtgctcatagcttgcctacatcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGAAAGCACGTTTTCCTAAGTGCAGGGGATTTTTATCTGGCTAGTCGATCCT

Basic information

species Zea mays
transcript GRMZM2G158627_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6056632|gb|AW091037.1|AW091037
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
EST: gi|60345148|gb|DN212121.1|DN212121
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
EST: gi|37373885|gb|CF623267.1|CF623267
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
EST: gi|113702485|gb|EE679989.1|EE679989
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
EST: gi|78022271|gb|DV490658.1|DV490658
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
EST: gi|78109267|gb|DV527683.1|DV527683
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
EST: gi|60337676|gb|DN204649.1|DN204649
EST:     CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATG                         ATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA
genomic: CAAGGTCTCTTTCCAGATTGAAGAACCAGTTCCAAGCTGGAAAGGGCATGgtaagcagtc ... tcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagaaaaaaaaaactactcctttgtgctcatagcttgcctacatcctttccagATTACAGTTGACTGCATCGAAGGTTATCCACCGGTCAGTTTACTGCTAGGAAAGCACGTTTTCCTAAGTGCAGGGGATTTTTATCTGGCTAGTCGATCCT
                                       cctacatcctttcc  CT-rich tract
     aaaaaaaaaactact  TA-rich tract