1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttataaccggttgatcaacacgatacttattttggaatatctttttcatgaatagtttattctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT
species | Zea mays |
transcript | GRMZM2G158627_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|60345148|gb|DN212121.1|DN212121
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|37373885|gb|CF623267.1|CF623267
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGEST: gi|78022271|gb|DV490658.1|DV490658
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAG GATCAGTATATTAGGGACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGEST: gi|60337676|gb|DN204649.1|DN204649
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
EST: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGT--C-- -A-CAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
genomic: AATCTGTGGGCAGTGACAAAAACACACTGGAAGAGATTTTGAAGTCACAGgtaagttata ... ttctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATG
tcaacacgatacttattttggaatatctttttcatgaatagtttattctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT
tttattct CT-rich tract
ttattttggaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttataaccggttgatcaacacgatacttattttggaatatctttttcatgaatagtttattctgtacagGATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG