1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGCTAACATCCCTATATTGCTTTTGTTATAGGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttacaagttttctatttgtctaagttttagcatattgtttctgaaacttcagcacaaaaaaacatctatggttgcccagaaccttgattgcttatttgctaaatttatattttaatatgcttactataagtatctctgcacgtgcag
species | Zea mays |
transcript | GRMZM2G158627_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAG GTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCTEST: gi|78022271|gb|DV490658.1|DV490658
genomic: TAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
EST: CGAGCTGACCAGTCATT-TTTGAAGCTGGAGTGGCTCGAGAG GTTGTGAACACGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
genomic: CGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttaca ... gcacgtgcagGTTGTGAACAGGATCCAAAAATTACGGAAGACTGCTCAGCTTGAACCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTAACATCCCTATATTGCTTTTGTTATAGGCGACGTTTTAGTCATTTTAGATCTACGAGCTGACCAGTCATTGTTTGAAGCTGGAGTGGCTCGAGAGgtagtttacaagttttctatttgtctaagttttagcatattgtttctgaaacttcagcacaaaaaaacatctatggttgcccagaaccttgattgcttatttgctaaatttatattttaatatgcttactataagtatctctgcacgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA