1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcgatcgatcctcaattctttttgttgtatcggggcttttcaaattcaactcgaatgcctactcaatcatatgcccccttggtatcttcagtt...
species | Zea mays |
transcript | GRMZM2G158627_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATTATGCCAAAAGAAATGGCACCAACAGATGAT GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTG-CATAEST: gi|6056632|gb|AW091037.1|AW091037
genomic: AATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATAEST: gi|60345148|gb|DN212121.1|DN212121
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATAEST: gi|37373885|gb|CF623267.1|CF623267
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATAEST: gi|113702485|gb|EE679989.1|EE679989
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT GTATTACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATAEST: gi|78022271|gb|DV490658.1|DV490658
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: ACGCACTTGGTTCGCCAATTATGCCAAAAGAAATGGCACCAACAGATGAT GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATAEST: gi|60337676|gb|DN204649.1|DN204649
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
EST: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGAT GTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
genomic: ACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcg ... ttgtttgcagGTAATACTTGGCGAGGAGTCTCACAATGTACATGACATGTCATTTGTCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAGTATATTAGGGACGCACTTGGTTCACCAATTATGCCAAAAGAAATGGCACCAACAGATGATgtaagtttcgatcgatcctcaattctttttgttgtatcggggcttttcaaattcaactcgaatgcctactcaatcatatgcccccttggtatcttcagtt
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccccc