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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTGCTTATGCTCCCCTTgtaagtccgtgggtttagtgtcataccaactcttttgtacaagtgaatactgaatagaaaaaatttcataccggtaaacacaatgcag

Basic information

species Zea mays
transcript GRMZM2G154165_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
AGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTGCTTATGCTCCCCTTgtaagtccgtgggtttagtgtcataccaactcttttgtacaagtgaatac-----------tgaatagaaaaaatttcataccggtaa-acacaatgcag-
||| ||||| || ||||| |||||||| |||||||||||||||||||| || || |||||||| || ||||| ||||| || ||||| ||||| || |||||||||   ||  || |||   | |   |   |   ||  || | |||||           | ||| | |||  |   || |   ||  ||| |     | 
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgt-ttcagtcatacagttatattagagtttaaataaatacatttgcctttttcaattggaaatttgaaatgcacatagtacataccttggg

upper sequence: GRMZM2G154165_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 9
AGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTGCTTATGCTCCCCTTgtaagtccgtgg-gtttagtgtca--taccaactcttttgta-caagtgaatactgaatagaaa----aaatttcataccggtaaacacaatgcag----
||| ||||| || || ||||| ||||| ||||||||||| ||  | || || || |||||||| || ||||| |||||||| ||||| |||||||| ||||||||| | ||  |  |  ||     |   || || |||    |||   ||   || ||  ||     | |  | | | |   |   | | ||  |    
AGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTGCGTATGCTCCTCTTgtaagtacttgctgcatcatgaagattggaaagtcatttaaggcaaacaaaatatgtatctaagtatcagagattaaaacacaagttatattgttgggct