Sequence
atgc intronic sequence ATGC exonic sequenceCACATTGCAACAGTTGGGACTGCAATGGCATCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAGgttattacatttttggcttctagaagcaaacaattaccttaatcaagtgctgtcattcacctaaaactgatgattctttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 16
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 18
CACATTGCAACAGTTGGGACTGCAATGGCATCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAGgttattacatttttggcttctagaagcaaacaattaccttaatcaagtgctgtcattcacctaaaactgatgattctttttcag
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CATATTGCTACTGTTGGTACTGCCATGTCTTCCCCAGAGAAGGCAGCTTGGGAAATTTTCCACTCATTGGATGTCAAATATGTTCTTGTTGTCTTTGGAGgttaggttctttctctctattggga--------ttatctttattta-ccctgtt-ctgatttgatgct-ataattattaa-cag
upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 16
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 18
CACATTGCAACAGTTGGGACTGCAATGGCATCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAGgttattacatttttggcttctagaagcaaacaattaccttaatcaagtgctgtcattcacctaaaactgatgattctttttcag
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CATATTGCTACTGTTGGTACTGCCATGTCTTCCCCAGAGAAGGCAGCTTGGGAAATTTTCCACTCATTGGATGTCAAATATGTTCTTGTTGTCTTTGGAGgttagcttctttctccttatcggga--------ttatcttaagtca-ccctgtt-ctgatttgatact-ataattattaa-cag
upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 16
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 18
CACATTGCAACAGTTGGGACTGCAATGGCATCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAGgttattacatttttggcttctagaa--gcaaacaattaccttaatcaagtgctgtcattcacctaaaactgatgattctttt-tcag
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CACATTGCAACTGTTGGCACTGCAATGTCATCTCCAGAAAAGGCGGCGTGGGAAATTTTCAACTCCTTGGATGTGAAATATGTTCTTGTCGTCTTTGGTGgt----atgtgtttggctcatgacattgccatcttgtgtattatctctgaagtat-attctct--gatcggacaatcatttcattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67014712|gb|CO443461.1|CO443461EST: GGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAG GGCTTATTGGCTACCCAAGTGATGATATTAATAAGTTCCTCTGGATGGTTC
genomic: GGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAGgttattacat ... tctttttcagGGCTTATTGGCTACCCAAGTGATGATATTAATAAGTTCCTCTGGATGGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACATTGCAACAGTTGGGACTGCAATGGCATCTCCAGAAAAAGTAGCATGGGAGATCTTCAATTCTTTAGATGTCAAATATGTGCTTGTTATCTTTGGAGgttattacatttttggcttctagaagcaaacaattaccttaatcaagtgctgtcattcacctaaaactgatgattctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG