Sequence
atgc intronic sequence ATGC exonic sequencegtaagtccgtgggtttagtgtcataccaactcttttgtacaagtgaatactgaatagaaaaaatttcataccggtaaacacaatgcagGTTGTGCTTGGAACACTTCTGGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATCATTTCTGGTATATTGATTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154165_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 9
---------gtaagtccgtgggtttagtgtcataccaactcttttgtac--aagtgaatactgaatagaaaaaatttcataccggtaaa-cacaatgcagGTTGTGCTTGGAACACTTCTGGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATCATTTCTGGTATATTGATTGT
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acaagccagaagtatctttggtttcaatctggatttatatattttgaacctatctcaacttcatcttgttcctggttcacatgattttttcttaatgcagGTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAATGCTGTAATGACATCAGAGCATTTTGCATCATTTCTG-------------
upper sequence: GRMZM2G154165_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 9
-----------------------------------------------------------gtaagtccgtgggtttag-tgt-cataccaactcttttgtacaagtgaatactgaatagaa---aaaatttcataccggtaaacacaatgcagGTTGTGCTTGGAACACTTCTGGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATCATTTCTGGTATATTGATTGT
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gtaagtatctgtttcagtcatacagttatgttagagtttaaataaaaacatttgcctttttcaattggaaagttgaaatgcacatagtacataacttgggcttgatactgtaagctgtaatttgaaatgtgcacttgattttctgaatgcagGTTGTATTGGGAACATTGTTGGCTGCCTTGGTGCCTGTGGTTGGGTTTAATGCTGTAATGACATCAGAGCATTTTGCATCATTTCTG-------------
upper sequence: GRMZM2G154165_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 9
-gtaagtccgtgggtttagt-gtcat-accaactcttttgtacaagtgaatactgaatagaaaaaatttcataccggtaaacacaa---------tgcagGTTGTGCTTGGAACACTTCTGGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATCATTTCTGGTATATTGATTGT
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attagacaccaatgtttggttgccaggaaaaaaaatgtttcataactttttaacaaagaaatctcttttccttgtagtatttatagctttttcattgcagGTTGTGTTGGGAACATTGTTAGCAGCTTTGGTGCCTGTTGTTGGTTTCAATGCAGTAATGACATCAGAACATTTTGCATCATTTCTG------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtacaagtgaatactgaatagaaaaaatttcataccggtaaacacaatgcagGTTGTGCTTGGAACACTTCTGGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATCATTTCTGGTATATTGATTGT
aatactgaatagaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtccgtgggtttagtgtcataccaactcttttgtacaagtgaatactgaatagaaaaaatttcataccggtaaacacaatgcagGTTGTGCTTGGAACACTTCTGGCAGCATCGGTACCTGTTGTTGGTTTTAATGCAGTAATGACGTCAGAGCACTTTGCATCATTTCTGGTATATTGATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA