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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgactgccaatgcatactattagaaatgcttcattggtagatttgaactactgttagcatgactgaattgtttggttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATTCACTGCTCCAGTTTTCTCAGTCAATGCGTCCTGGGCAACTTACCTATTA

Basic information

species Zea mays
transcript GRMZM2G154165_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 4
lower sequence: PP1S404_37V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------gtatgtgactgccaatgcatactattagaaatgcttcattggtagatttgaactactgttagcatgactgaattgtttggttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATTCACTGCTCCAGTTTTCTCAGTCAATGCGTCCTGGGCAACTTACCTATTA
                                      | ||||     ||  |  ||   |||    |  || || || |     |  ||      ||       ||     ||||||  |  |||| ||    |  |  ||||||| || |||||||||||||| || ||||| ||||| || ||||| |||||||    |||||| ||||| || |  ||  ||
gtaagacggacggatgtgcagtgttttctctaccgacagcatgtt-tcacctttcgatgtgattgctgaatctgcagtgttcatcatcgacattcagtacttatgttggggcatttggt--gtgtagGGTGGCACAAGCTATTAACATTCCTTTGTCGGTGGAGACGGTGTGTGTTTTCACCGCCCCAGTCTTCTCAGCGTTTGCGTCATGGGCCACATTTCTGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71447977|gb|DR829027.1|DR829027
EST:     GGAGGGACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTG                         GTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT
genomic: GGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgact ... gttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT
EST: gi|76017470|gb|DT944640.1|DT944640
EST:     GGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTG                         GTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT
genomic: GGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgact ... gttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattggtagatttgaactactgttagcatgactgaattgtttggttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATTCACTGCTCCAGTTTTCTCAGTCAATGCGTCCTGGGCAACTTACCTATTA
                                    aattgttt  TA-rich tract