Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatctatccgaaccccaccatttttaaatccttttgggaattgggaatcccaacatggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag

Basic information

species Zea mays
transcript GRMZM2G154165_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 1
CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaag-atctatccgaaccccaccatttttaaatccttttgggaattgggaatcccaacat--ggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag
| || | | || | |||| |||||| || || |||||| || || | |||||||| ||||||||||| ||||| || ||||||||||| || | ||| | || | | | ||| || | ||| | | | ||| | || ||| || | | || |
CACAACCACCACCTCCATCAGGCACGCGTTCGGCAACGTCCTCGCGTTCTTCATACTTCTCATGATCGGCGTTCTCGCCTTCTCGATCCGTCTCTTCTCCgtaagcatttttcctcattccgcagatctggttacctgaacctcgtttcggttccgacttttcgttttctcaacgcgattgcatgcttctatattcagcg------------

upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 1
CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaag-atctatccgaaccccaccattttta------aatccttttgggaattgggaatcccaacatggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag
| | | | | || | ||||||||||| || || |||||| ||| || ||||||||||| || |||||||| ||||| || ||||||||||| || | ||| | || | | | | ||| | || || | | || | || ||||| | | | |
CACCACCACCAACTCCATCAGGCACGCCTTCGGCAACGTCCTCGCGTTCTTCATCCTTCTCCTCATCGGCGTTCTGGCCTTCTCGATCCGTCTCTTCTCCgtaagcatttctcctcattccgcagatctggttacctgaacctcgttccggttccgagttttcgttttcttaacacgattgcatgcttctaaattcagcc----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71447977|gb|DR829027.1|DR829027
EST:     TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCC                         GTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
genomic: TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatcta ... tgtgccgcagGTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
EST: gi|76017470|gb|DT944640.1|DT944640
EST:     TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCC                         GTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
genomic: TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatcta ... tgtgccgcagGTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC