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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgaaataaggaactcggcttgttgatctcattctgttatgttgattgcactactttgctgaacaatttgtgtctttggttgtgctttgtgtcctttccagCCCGGAATGGAAGAAGGTCGCAATTGCTATGCAGATGAGCATTATCTGCCGACCCTATTCCACGTTAGTAGTGACCGCACAGTGCCATTTTATATTTTAA

Basic information

species Zea mays
transcript GRMZM2G149969_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149969_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g12890.1 (Oryza sativa), 3'ss of exon 7
cgaaataaggaactcggcttgttgatc-tcattctgttatgttgattgcactactttgctgaacaatttgtgtctttggttgtgctttgtgtcctttccagCCCGGAATGGAAGAAGGTCGCAATTGCTATGCAGATGAGCATTATCTGCCGACCCTATTCCACGTTAGTAGTGACCGCACAGTGCCATTTTATATTTTAA
|    |    | |||  |    |||     |      |    |  |         |   ||  | |    | ||||    |||  |||    | ||  ||||| ||||||||||| ||||||||||| |||||||||||||||||  |||| || |||||||                                       
cctgttcttaacctcaccaccctgactgctaccgcactgaaatattcatgacttgtaattgtgctaaa-atatcttacagtgtttttttctcctttcgcagCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTTGCCAACACTATTCCTT-------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactactttgctgaacaatttgtgtctttggttgtgctttgtgtcctttccagCCCGGAATGGAAGAAGGTCGCAATTGCTATGCAGATGAGCATTATCTGCCGACCCTATTCCACGTTAGTAGTGACCGCACAGTGCCATTTTATATTTTAA
                                      ctttgtgtcctttcc  CT-rich tract
               aacaattt  TA-rich tract