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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatattatttgtattcatacaacttcagataatttgatttgatagttttggttctgtctaagaagtattaggattctgatattggcaaatttctagcagGTAGGGTGGGGTATGATTACAATGGTTGATGCAGAGAGGAGGCTGTTGGCAAAAGCTCTAGAAGATATAGACAACCAGCATTTTGTATTGCTTTCAGACA

Basic information

species Zea mays
transcript GRMZM2G149969_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149969_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g12890.1 (Oryza sativa), 3'ss of exon 3
taatattatttgtattcataca-acttcagataatttgatttgatagttttggttctgt-ctaagaagtattaggattctgatattggcaaatttctagcagGTAGGGTGGGGTATGATTACAATGGTTGATGCAGAGAGGAGGCTGTTGGCAAAAGCTCTAGAAGATATAGACAACCAGCATTTTGTATTGCTTTCAGACA
      |   |  |   | ||  ||    ||  |    ||   |    |    |||||   | |  | | |    || || | |||| |||||  ||  |||||||| ||||| |||||| | ||||||||||||||||||||| || ||||||| || ||||||||||  |||||||| |  ||||| |||||||| ||||
--ggtctgcatcaacctaaacgcaccgatgagcacccaatcatacgcatcatattctgaattgaatactttgcaaatgcttacattgccaaatacctttcagGTAGGATGGGGCATGATTTCTATGGTTGATGCAGAGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTGTTTTGCTTTCTGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttggttctgtctaagaagtattaggattctgatattggcaaatttctagcagGTAGGGTGGGGTATGATTACAATGGTTGATGCAGAGAGGAGGCTGTTGGCAAAAGCTCTAGAAGATATAGACAACCAGCATTTTGTATTGCTTTCAGACA
                             ttctgat  putative branch site (score: 3)
                                             tttct  putative PPT
                                          aaatttcta  TA-rich tract