Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCACGACCCTGGGCCACATGGAGTTTACAGATACTCAAAGAATATGTTACCTGAGGTTCGAGAGTCGGAGTTCAGGAAAGGTTCTCAGgtgaccttaatattgcctctttcaagttcacagattgtggatgttaagtattcagtgggctagtaggctagaaagcattgttaaccaataagtatcctct...

Basic information

species Zea mays
transcript GRMZM2G149969_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149969_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g12890.1 (Oryza sativa), 5'ss of exon 6
TTTTCACGACCCTGGGCCACATGGAGTTTACAGATACTCAAAGAATATGTTACCTGAGGTTCGAGAGTCGGAGTTCAGGAAAGGTTCTCAGgtgaccttaatattgcctctttcaagttcacagattgtggatgttaagtattcagtgggctagtaggc-tagaaagcattgttaaccaataagtatcctct-------------------------------------------------------------------------------------
 ||| | || ||||||||||||||||| |  |||||||| ||| ||||||| || || |||||||||   || || || || || || ||||||| | | || || ||   | ||||||| || | | |||||  | |  ||  |    |  || |  | |||      || | ||  || | | |   | |                                                                                     
CTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTCGAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGgtgagcatcatttttcca--tgcaagttctcaaactttggattgtga--atcaaactagagaggatacatagtttctgttttgaataaagatgcacaattttagttctattattttttatgtaatatgtcttccaaattttgtctgggtttgaactgtcttcaaacacaatttctgaatatcacag