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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttttgaacctaattttctatttactttccttatggcaccgtctgaacaaaaaaaaaaaaccaagggatacatcttactccatttgtgatctctctagGGTCATGATGGGAGATACACTATATATGTGCATGCTTCACGGGAGAAGCACGAACATGTCAGTCCCATATTTATTGGTCGAGACATACACAGTGAGAAG

Basic information

species Zea mays
transcript GRMZM2G149969_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149969_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g12890.1 (Oryza sativa), 3'ss of exon 2
-ttgttttgaacctaattttctatttactttccttatggcaccgtctgaacaaaaaaaaaaaaccaagggatacatcttactccattt---gtgatctctctagGGTCATGATGGGAGATACACTATATATGTGCATGCTTCACGGGAGAAGCACGAACATGTCAGTCCCATATTTATTGGTCGAGACATACACAGTGAGAAG
 ||   ||     |||||| || ||||       |||   ||  | |   || | |    ||  | |        |  |    |||||    | || | |  |||| ||||| ||||| |||||||||||||| ||||||||||| ||||| | |||||||||||||||  ||||| |||| ||||||||||||||||| |||
gtttgcttccttttaatttcct-tttatgcgtggtattagacaatgt---catacaccttaattcgatttgccttttctgtggcatttcccataatttttgcagGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGTTGGCCGAGACATACACAGTGATAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaacaaaaaaaaaaaaccaagggatacatcttactccatttgtgatctctctagGGTCATGATGGGAGATACACTATATATGTGCATGCTTCACGGGAGAAGCACGAACATGTCAGTCCCATATTTATTGGTCGAGACATACACAGTGAGAAG
                            atcttac  putative branch site (score: 3)
                                              tctctct  putative PPT
     aaaaaaaaaaaaccaa  TA-rich tract