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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATGATGGGAGATACACTATATATGTGCATGCTTCACGGGAGAAGCACGAACATGTCAGTCCCATATTTATTGGTCGAGACATACACAGTGAGAAGgtaatgctattaaggatgaagccatgctgaacatttaaaacatgtgtatttataagatcataaatcagagatttgttttgatttactactatttcttata...

Basic information

species Zea mays
transcript GRMZM2G149969_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149969_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g12890.1 (Oryza sativa), 5'ss of exon 3
GGTCATGATGGGAGATACACTATATATGTGCATGCTTCACGGGAGAAGCACGAACATGTCAGTCCCATATTTATTGGTCGAGACATACACAGTGAGAAGgtaatgctatta--aggatgaagccatgctgaacatttaaaacatgtgtatttataagatcataaatcagagatttgttttgatttactactatttcttata
|| ||||| ||||| |||||||||||||| ||||||||||| ||||| | |||||||||||||||  ||||| |||| ||||||||||||||||| ||||||||  | ||   || |||||||| || ||||| | |||  |||||| |||||  |  || | |    |  |  ||    || ||     |||||| |   
GGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGTTGGCCGAGACATACACAGTGATAAGgtaatcattttctcagtatgaagccttggtgaacttgtaaggcatgtgcatttaggacttc-tgaggtggtaagatgcagagaattttccatatttcattc-