1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatttcttgtcatgccttttgtttccatacatgcatacttcacatatcctattcccttctattcatttgcatttccaacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGTCTACTCATTATGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTA
species | Zea mays |
transcript | GRMZM2G149272_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|211510916|gb|FL028116.1|FL028116
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|6342730|gb|AW165554.1|AW165554
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: TCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|60401092|gb|DN233899.1|DN233899
genomic: TCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|211510917|gb|FL028117.1|FL028117
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|6095609|gb|AW120276.1|AW120276
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|29945503|gb|CB815672.1|CB815672
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|14203856|gb|BG837533.1|BG837533
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|89246725|gb|DY618512.1|DY618512
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|67012049|gb|CO440798.1|CO440798
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: TCATGTTCTGAT GGTTGGGGAGTCACTGTAACTCTTGGCTTACCAAAAGGAAAACAAGAAGTGEST: gi|91874802|gb|EB404759.1|EB404759
genomic: TCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|5847100|gb|AW000179.1|AW000179
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCCCTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|71769714|gb|DR967651.1|DR967651
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|71762504|gb|DR960441.1|DR960441
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|5901133|gb|AW042233.1|AW042233
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGGGEST: gi|5922168|gb|AW055438.1|AW055438
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|76016067|gb|DT943237.1|DT943237
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTTTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|211322359|gb|FL445870.1|FL445870
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: CACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGEST: gi|71325642|gb|DR799508.1|DR799508
genomic: CACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
EST: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGAT GGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
genomic: GTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttctt ... aacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTG
tgcatacttcacatatcctattcccttctattcatttgcatttccaacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGTCTACTCATTATGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTA
tattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcttgtcatgccttttgtttccatacatgcatacttcacatatcctattcccttctattcatttgcatttccaacttgctagGGTTGGGGAGTAACTGTAACTCTTGGCTTACCAAAAGGAAAACTAGAAGTGTCTACTCATTATGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTA
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