1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattagcccgccccgccttgcttcttgcgtagggtttagtggcgagtaaaattggatggcctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTC
species | Zea mays |
transcript | GRMZM2G149272_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCGCCG-CGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211063859|gb|FL423538.1|FL423538
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211284822|gb|FL429278.1|FL429278
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|78087348|gb|DV515741.1|DV515741
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211199112|gb|FL383376.1|FL383376
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|91873431|gb|EB403388.1|EB403388
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: TTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|71448196|gb|DR829246.1|DR829246
genomic: TTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|71769715|gb|DR967652.1|DR967652
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211284101|gb|FL384400.1|FL384400
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|76921975|gb|DV168787.1|DV168787
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: CGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|89252932|gb|DY624718.1|DY624718
genomic: CGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|89755821|gb|DY686098.1|DY686098
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|71331903|gb|DR802837.1|DR802837
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211026991|gb|FL377493.1|FL377493
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTKCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211539558|gb|FL409998.1|FL409998
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACGGGGCCAG-CACTGGTGATGGAGGAGGTGGAGGEST: gi|211397534|gb|FL373477.1|FL373477
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|148958260|gb|EC904476.2|EC904476
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: CGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|71325644|gb|DR799509.1|DR799509
genomic: CGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|71771533|gb|DR969470.1|DR969470
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211284823|gb|FL429279.1|FL429279
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211323238|gb|FL374213.1|FL374213
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211228051|gb|FL407860.1|FL407860
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATSGAGGAGGTGGAGGEST: gi|78087855|gb|DV516248.1|DV516248
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: CGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|149083974|gb|EE173360.2|EE173360
genomic: CGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211355536|gb|FL044624.1|FL044624
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTEST: gi|211513267|gb|FL372259.1|FL372259
genomic: GCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGA-Ggtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACT
EST: GGCCGCCG-CGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTKCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|101382109|gb|EB813110.1|EB813110
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|211105176|gb|FL405678.1|FL405678
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGEST: gi|76016068|gb|DT943238.1|DT943238
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
EST: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAG CGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
genomic: GGCCGCCGCCGATGCATCTTCGTTGCCTCCGTCCGCCATCACCTGCCGAGgtattagccc ... ctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGG
ccttgcttcttgcgtagggtttagtggcgagtaaaattggatggcctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTC
agtaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattagcccgccccgccttgcttcttgcgtagggtttagtggcgagtaaaattggatggcctgcgcgcagCGGCGGTGGCGTGGGGACCGGGCCAGCCACTGGTGATGGAGGAGGTGGAGGTCGCCCCGCCGGGGCCCATGGAGATCCGTGTCAAGGTCGTCTCCACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC