1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacctgctacgctgtcaagttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacag
species | Zea mays |
transcript | GRMZM2G149272_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGTCCAAGATTATAGGAGTTGATACT-ATCCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|211510916|gb|FL028116.1|FL028116
genomic: GCGTCCAAGATTATAGGAGTTGATACTAAT-CCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|91873431|gb|EB403388.1|EB403388
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|211510917|gb|FL028117.1|FL028117
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|71769715|gb|DR967652.1|DR967652
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAAGCA-GAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|76921975|gb|DV168787.1|DV168787
genomic: GCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAA-GCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|29945503|gb|CB815672.1|CB815672
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCCCGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|14203856|gb|BG837533.1|BG837533
genomic: GAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|89246725|gb|DY618512.1|DY618512
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|148958260|gb|EC904476.2|EC904476
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|78087855|gb|DV516248.1|DV516248
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|76016067|gb|DT943237.1|DT943237
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|76016068|gb|DT943238.1|DT943238
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAACEST: gi|71325642|gb|DR799508.1|DR799508
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
EST: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGG GGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
genomic: GGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacc ... cctggtacagGGAAATCATTTGGTGTCACGGACTTTATTAACCCAGATGAATTGAGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCTCAAGGTGCTAAGCTTCGAGGGGCGTCCAAGATTATAGGAGTTGATACTAATCCTGAGAAGCAAGAAAAGGgtatgctacctgctacgctgtcaagttgtacattctgctatgaaccctctttgtgttaattattttgttcctggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA