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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctcttatctcccttcatgctgctaagtgctgagctttgcaaattgcttctaataatgatatctgttgacctgaacgccttcgatctatag

Basic information

species Zea mays
transcript GRMZM2G149272_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211338814|gb|FL389701.1|FL389701
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGTGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211063859|gb|FL423538.1|FL423538
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211284822|gb|FL429278.1|FL429278
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|78087348|gb|DV515741.1|DV515741
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211199112|gb|FL383376.1|FL383376
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|91873431|gb|EB403388.1|EB403388
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|71448196|gb|DR829246.1|DR829246
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211284101|gb|FL384400.1|FL384400
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGAHCGAGTTCCAAGTCGGTGACMA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|89252932|gb|DY624718.1|DY624718
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|89755821|gb|DY686098.1|DY686098
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|71331903|gb|DR802837.1|DR802837
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211026991|gb|FL377493.1|FL377493
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211539558|gb|FL409998.1|FL409998
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211397534|gb|FL373477.1|FL373477
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|71325644|gb|DR799509.1|DR799509
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|71771533|gb|DR969470.1|DR969470
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211284823|gb|FL429279.1|FL429279
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|50322631|gb|CO517757.1|CO517757
EST:     GCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211323238|gb|FL374213.1|FL374213
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211228051|gb|FL407860.1|FL407860
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|149083974|gb|EE173360.2|EE173360
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211513267|gb|FL372259.1|FL372259
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|101382109|gb|EB813110.1|EB813110
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|211105176|gb|FL405678.1|FL405678
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG                         AGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA
genomic: GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGGgtgcgctctt ... cgatctatagAGTAGTAGAGAGTGTCGGTGAAGGTGTGACCGAGTTCCAAGTCGGTGACCA