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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactacggcggcggggctgcagcctctgcgtttactatggtagcctcctgcttatgcgtagtaatgtatattctccctacttgtttgagaattattttcatatcataattttttttccttagctgagagcctgagacaaacgatctctctgatcgaatttgctcatctgtgttctcttccaattccaacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG

Basic information

species Zea mays
transcript GRMZM2G149272_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211338814|gb|FL389701.1|FL389701
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGTGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211063859|gb|FL423538.1|FL423538
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284822|gb|FL429278.1|FL429278
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|78087348|gb|DV515741.1|DV515741
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211199112|gb|FL383376.1|FL383376
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|91873431|gb|EB403388.1|EB403388
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71448196|gb|DR829246.1|DR829246
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71769715|gb|DR967652.1|DR967652
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284101|gb|FL384400.1|FL384400
EST:     TCGTCTCCACCTCCGTCTGCCGCAKCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|76921975|gb|DV168787.1|DV168787
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|89252932|gb|DY624718.1|DY624718
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|89755821|gb|DY686098.1|DY686098
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71331903|gb|DR802837.1|DR802837
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211026991|gb|FL377493.1|FL377493
EST:     TCGTCTCCACCTCCGTCTGCCGCAGNGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211539558|gb|FL409998.1|FL409998
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211397534|gb|FL373477.1|FL373477
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|148958260|gb|EC904476.2|EC904476
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71325644|gb|DR799509.1|DR799509
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|71771533|gb|DR969470.1|DR969470
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211284823|gb|FL429279.1|FL429279
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211323238|gb|FL374213.1|FL374213
EST:     TCGTCTCCACCTCCGTCTGCCGCAGSGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211228051|gb|FL407860.1|FL407860
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|78087855|gb|DV516248.1|DV516248
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|149083974|gb|EE173360.2|EE173360
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211513267|gb|FL372259.1|FL372259
EST:     TCGTCTCCACCTCCGTCTGCCGCAKNGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|101382109|gb|EB813110.1|EB813110
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|211105176|gb|FL405678.1|FL405678
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
EST: gi|76016068|gb|DT943238.1|DT943238
EST:     TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAG                         GCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
genomic: TCGTCTCCACCTCCGTCTGCCGCAGCGACGTCACTGCCTGGCAATCCAAGgtatgcacta ... caacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatctctctgatcgaatttgctcatctgtgttctcttccaattccaacatgcagGCGCAACTTGATCTGTTCCCCAGAGTCTTCGGCCACGAGGCATCCGG
      ctctgat  putative branch site (score: 4)
                               ttctcttccaattcc  putative PPT
               aattt  TA-rich tract