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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaaaaaaaaaaaaaaggagccctgaactgctttcagttttcacttcgtcagcgatagtgtggacatcatggtacatattccttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACGAATGGTACTGCCAAAAACTCATATTGGCACTAGACGTCAGCAGGGTGTC

Basic information

species Zea mays
transcript GRMZM2G147268_T03
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351308|gb|CD435665.1|CD435665
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG                         AAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
EST: gi|32796066|gb|CD948302.1|CD948302
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACATGTGTCGAG                         AAAGCTGTTGAGGAGCTATTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
EST: gi|113656773|gb|DW811565.1|DW811565
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG                         AAAGCTGTTGAAGAGCTAACTGAAGGGACGGTACAAAG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTA-CTGAAGGG-CGGTACAAAG
EST: gi|32798915|gb|CD951151.1|CD951151
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACATGTGTCGAG                         AAAGCTGTTGAGGAGCTATTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
EST: gi|166509126|gb|EG135077.1|EG135077
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG                         AAAGCTGTTGAAGAGCTAACTGAAGGGCGGTACAAAG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTA-CTGAAGGGCGGTACAAAG
EST: gi|71761860|gb|DR959797.1|DR959797
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG                         AAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
EST: gi|32796348|gb|CD948584.1|CD948584
EST:     ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACATGTGTCGAG                         AAAGCTGTTGAGGAGCTATTGAAGGGCGGTACAAAGTTGGAGCATTTGACG
genomic: ATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAGgtacgcaaaa ... ttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcacttcgtcagcgatagtgtggacatcatggtacatattccttgttttcagAAAGCTGTTGAAGAGCTACTGAAGGGCGGTACAAAGTTGGAGCATTTGACGAATGGTACTGCCAAAAACTCATATTGGCACTAGACGTCAGCAGGGTGTC
                                       tattccttgttttc  CT-rich tract
                                   tacatatt  TA-rich tract