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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttctcaagtcgctgggttctgcggtcaattcgcaacaggcatgcgtatgaaatgaccgaccttcaggtagtaacatatgcgggcggtgattctactcatttctctgaaacattatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG

Basic information

species Zea mays
transcript GRMZM2G147268_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147268_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g43650.2 (Oryza sativa), 3'ss of exon 4
gtacgttctcaagtcgctgggttctgcggtcaattcgca-acaggcatgcgtatgaaatgaccgaccttcaggtagtaacatatgcgggcggtgattctactcatttctctgaaacattatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG
                        | |  |||||| ||   |   ||||| |||       |  || || |    ||  || |      | |  |||         ||||||||   |     |||||| ||| ||||||||||||||||||| ||  | ||||||||| ||||||||||   ||||||||| || |||
-----------------------gtacattcaatttgcttgctaccatgcttatttt-cagctcactttgaatgggt--cacagcataacagcaatttc------ctctctgaattttgcactgcagGTGTGCATATCTAAAGGGTTAGGCGCTCCTGTTGGATCAGTTATTGTTGGTTCGACGGCCTTCATAGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351308|gb|CD435665.1|CD435665
EST:     CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG                         GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGT
genomic: CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGgtacgttctc ... ttatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGT
EST: gi|148938716|gb|EC883048.2|EC883048
EST:     CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG                         GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTT
genomic: CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGgtacgttctc ... ttatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTT
EST: gi|113600071|gb|DW762523.1|DW762523
EST:     CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG                         GTATGCCTATCTAAAGGGTTAGGCGCACCCA
genomic: CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGgtacgttctc ... ttatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCA
EST: gi|71447159|gb|DR828209.1|DR828209
EST:     CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG                         GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGG
genomic: CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGgtacgttctc ... ttatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGG
EST: gi|71761860|gb|DR959797.1|DR959797
EST:     CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG                         GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGT
genomic: CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGgtacgttctc ... ttatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGT
EST: gi|50331297|gb|CO526423.1|CO526423
EST:     CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG                         GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGT
genomic: CACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGgtacgttctc ... ttatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtaacatatgcgggcggtgattctactcatttctctgaaacattatgcgcagGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG
 tagtaac  putative branch site (score: 1)
                                        aaacattat  TA-rich tract