1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcacctgaacacacacacacacactcccagtcgcagggacacctgcttacgaaatacatttccatgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
species | Zea mays |
transcript | GRMZM2G147268_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGEST: gi|148938716|gb|EC883048.2|EC883048
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGEST: gi|113600071|gb|DW762523.1|DW762523
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: CTCGTATTTTCAATGCCTCTGTG GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGEST: gi|71447159|gb|DR828209.1|DR828209
genomic: CTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGEST: gi|71761860|gb|DR959797.1|DR959797
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGEST: gi|50331297|gb|CO526423.1|CO526423
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
cacacactcccagtcgcagggacacctgcttacgaaatacatttccatgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
tgcttac putative branch site (score: 74)
catttcc putative PPT
aaatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacctgaacacacacacacacactcccagtcgcagggacacctgcttacgaaatacatttccatgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC