1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagtcagaaccttaatctaaacacctgcagtagtatctttaatgaagggcacatccaaggttagctatccatattgagctttgtgcttcgtatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG
species | Zea mays |
transcript | GRMZM2G147268_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCEST: gi|32796066|gb|CD948302.1|CD948302
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCEST: gi|32798915|gb|CD951151.1|CD951151
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCEST: gi|71761860|gb|DR959797.1|DR959797
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCEST: gi|32796348|gb|CD948584.1|CD948584
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
EST: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAG TGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
genomic: CAAGTCTTGGAACAGCGCAATGTTCTTGCAATGCCAGCAAGTTCAAAAAGgtgaaactcc ... tatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGC
agggcacatccaaggttagctatccatattgagctttgtgcttcgtatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG
atattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcagaaccttaatctaaacacctgcagtagtatctttaatgaagggcacatccaaggttagctatccatattgagctttgtgcttcgtatcatgcagTGTCAGGTTCGTCATCCATTACCAGATTTCAGACAGCGATGTTCAATATGCATTGACGTGTGTCGAG
- - cagaacc
- - - - - - - - - - - -cctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcttc