Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcgacttctctgtttcaagtctaaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcag

Basic information

species Zea mays
transcript GRMZM2G147268_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147268_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g43650.2 (Oryza sativa), 5'ss of exon 5
GTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcgacttctctgtttcaagtctaaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcag
|| ||| ||||||||||||||||||| ||  | ||||||||| ||||||||||   ||||||||| || ||||| || || | |||| | | | || |    ||   | |   || | ||   ||  |   || ||| || | ||    ||||||
GTGTGCATATCTAAAGGGTTAGGCGCTCCTGTTGGATCAGTTATTGTTGGTTCGACGGCCTTCATAGAAAAGgtctgttcaa-ttctgtttgttaacttgttaccttaaactgca-gatgggatgtaacgatggaaatatgaacaatgctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351308|gb|CD435665.1|CD435665
EST:     GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG                         GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
EST: gi|71761860|gb|DR959797.1|DR959797
EST:     GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG                         GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
EST: gi|50331297|gb|CO526423.1|CO526423
EST:     GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG                         GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT