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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatcttagtcatggtgctaccattctgttctccattatgtttaatatgaacaaaatagcaatggttttgctacag

Basic information

species Zea mays
transcript GRMZM2G117900_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 5'ss of exon 7
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatcttagt-catggtgctaccattctgttctccatta---------tgtttaatatgaacaaaatagcaatggttttgctacag
 ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||  | | ||   |  ||  |  |   | ||   || ||         | ||   |||||   |||| |  ||| || |  || ||
CCCTCCAAACATGATTGTCATTCGCTCCTTTGATGTCAACAAGCCTGGTTCAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattccctcgtgtgtcatgtaattagattttttatcactacttttgggttattaggtatgacttaaattgtgatgcttcttttatag

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 5'ss of exon 7
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatctta--gtcatggtgcta------ccattctgttctccattatgtttaatatgaacaaaatagcaatggttttgctacag
 ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||| |    |   || |      ||        | || ||  |   ||||||| | ||||| |  ||| | ||||  || | | |||
CCCTCCAAACATGATTGTTATTCGCTCCTTTGATGTCAACAAGCCTGGTTCAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATTCTCAGAgtatgtgttctctcctgtaacataattaaatattttaatcagtagttttttatgttaagtatgagctgaatggtaatg-cttcgttccag

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G18240.2 (Glycine max), 5'ss of exon 7
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatc--ttagtcatggtgctaccattct-gttctccattatgtttaatatga-acaaaatagcaatggttttgctacag--------------
 || || ||||||||||||||||| || |||||||| || || |||||||  |||||||| ||||||| ||| |||||||||||||| || || || |||||| ||   |   | | |        || ||| || | ||| || |     |   |||  ||||  |   | || |||| | |                 
TCCACCTAACATGATTGTTATTCGGTCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATTAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGgtaggttggttggtcaatttccaatatatcatgcttgatctgcactgataattccatgctacaatttcaaagtgattttacaaataatgccatggtgtcc

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 7
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatcttagtcatggtgctaccattctgttctccattatgtttaatatgaacaa--aatagcaatggttttgctacag-------------------
 ||||| || ||||| |||||||| || |||||||| || || |||||||  |||||||| ||||| | ||| |||||||||||||| || ||  | |||||| || |   || ||||   | | |   |    | ||  |||     | |  | |   |   |||  |||        ||  |                   
TCCTCCTAATATGATCGTTATTCGGTCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGGAGCATTTTGAGGgtaggtct--tttcgtcaatttcccat-gtatcatgcttgatttgcactgacgtcactcacagatattaatatccccaataatgtatggaatgcataattttt

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv10s0042g01220.t01 (Vitis vinifera), 5'ss of exon 6
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatcttag------tcatggtgctaccattctgttctccatta-tgtttaatatgaacaaaatagc-----aatggttttgctacag------
 || || || |||||||| ||||| || |||||||| || |||||||| |  |||||||| || || ||||||||||| |||||||| || || |||||||||||||| || |        |||  |    |  | |  |  ||   | | || || | ||| |       |      |||| |||  || |        
ACCACCAAATATGATTGTGATTCGGTCATTTGATGTCAATAAGCCTGGGTTTGAGGTTGATGAGATAAGAGGTGGTGTTGCTGGTGGAAGCATTCTCAGGgtatgtatctcctctattacttcagagattcagaagtaagaactatgtaaatgcttcacatggatgctgctgatgcaaaatgctttatctgcttccacat

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 7
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatcttagtcatggtgctaccattctgttctccattatgtttaatatgaacaaaatagcaatggttttgctacag----------------------
 || || || |||||||||||||| || |||||||| ||||||||||| |  |||||||| || || ||||||||||| |||||||| || || |||||||||||| |  || | | ||  |   |    | || |    |  |   |   ||    |   | |   ||| | ||| | ||                       
ACCACCAAATATGATTGTTATTCGGTCATTTGATGTCAACAAGCCTGGGTTTGAGGTTGATGAGATAAGAGGTGGTGTTGCTGGTGGAAGCATTCTCAGGgtatgttt--ctcatttattatttcagaggtttggtagtaagaac--tatgtaaaggcttcacattgatgctgttggtgcaaaatgcttgatctgcttccacat

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 7
lower sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 6
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatctta---gtcatggtgctaccattctgttctccat-tatgtttaat--atgaacaaa-atagcaatggttttgctacag-----------
 ||||| |||||||| |||||||| || || ||||| |||||||||||| | || ||||||||||| |  ||||| || |||||||||||||| || |||||||||   | | |   || ||  ||  | |   |  |    ||| | ||||   |  |||  |  | || ||    |  ||                  
TCCTCCGAACATGATCGTTATTCGGTCGTTCGATGTCAACAAGCCTGGTGCCGAAGTTGACGAAATCAAGGGTGGCGTGGCTGGTGGCAGTATTCTGAGGgtatgttgttgtcaagtgtgataatgtaatcggccaatcagacatatgtgttgggttcatgtccggacatggctgcagggttaagttgatcaggtagtcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32840734|gb|CD980415.1|CD980415
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32942799|gb|CF047618.1|CF047618
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32906814|gb|CF011627.1|CF011627
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32930267|gb|CF035079.1|CF035079
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32932738|gb|CF037550.1|CF037550
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32840948|gb|CD980629.1|CD980629
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCGGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|7135034|gb|AW497883.1|AW497883
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32940834|gb|CF045653.1|CF045653
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|33093623|gb|CF053617.1|CF053617
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32840754|gb|CD980435.1|CD980435
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32934531|gb|CF039343.1|CF039343
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32928236|gb|CF033048.1|CF033048
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|37400883|gb|CF637802.1|CF637802
EST:     CAGAGG-TGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32841015|gb|CD980696.1|CD980696
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32945454|gb|CF050273.1|CF050273
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32840804|gb|CD980485.1|CD980485
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32841334|gb|CD981015.1|CD981015
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|33095600|gb|CF055594.1|CF055594
EST:     CAGAGATTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|33094211|gb|CF054205.1|CF054205
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32932301|gb|CF037113.1|CF037113
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32941656|gb|CF046475.1|CF046475
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32928487|gb|CF033299.1|CF033299
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32936251|gb|CF041063.1|CF041063
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|32943977|gb|CF048796.1|CF048796
EST:     CAGAGGCTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
EST: gi|33093513|gb|CF053507.1|CF053507
EST:     CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGG                         GGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG
genomic: CAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 210

GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATGAAAGATGAGAATGGAAACATTAAGTGCACGCCAATCTACTCAAGGATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 184

GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATGAAAGATGAGAATGGAAACATTAAGTGCACGCCAATCTACTCAAGGATTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 236

GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATGAAAGATGAGAATGGAAACATTAAGTGCACGCCAATCTACTCAAGGATTG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 171

GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatat ... tttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATGAAAGATGAGAATGGAAACATTAAGTGCACGCCAATCTACTCAAGGATTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTCCCAACATGATTGTTATTCGTTCCTTTGATGTTAACAAGCCTGGTTCAGAGGTTGACGAAATTAGAGGTGGTGTAGCTGGTGGCAGTATCCTCAGGgtatgtatatcttagtcatggtgctaccattctgttctccattatgtttaatatgaacaaaatagcaatggttttgctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG