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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgcaatctgtttaccatggttgtatggttctcggatttgatgtcagcacacctgatctattgatttattttgtttcttttaagttttcttatg...

Basic information

species Zea mays
transcript GRMZM2G117900_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 5'ss of exon 2
CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgcaatctgtttaccatggttgtatggttct-cggatttgatgtcagcacacctgatctattgatttattttgtttcttttaagttttcttatg
||||| ||||||||||| ||||||||||||||  | || |||||||||||  ||||  | || |||||||||||||||||||| || || |||||||| ||||| |||||||||  |||| |   ||| ||  ||||| ||  | |    | |||    |    |  ||  |||  | |||||| | |        | |  
CGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTGACGTGACAAAGCTCCACCCGTTATCGCCTGAAGTTATCTCACGCCAGGCGACGATCAATATAGgtattgatgcaatccttttagcgatgttttactgttctacgagtattgcat-agcttgtcactgcagttttttttctgtgtttcctgtctacaaagtgaat

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 5'ss of exon 2
CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgcaatctgtttaccatggttgtatggttctcggatttgatgtcagcacacctgatctattgatttattttgtttcttttaagttttcttatg------
 |||| ||| ||||| | ||||||||||||||  | || ||||| |||||  ||||  | ||||||||||||||||||||||| || || |||||||| ||||| ||||||| |  |||| ||  | | ||  ||| |  | ||   | | |     |   |  ||| | |  ||||| | | || |  |||||||||||      
GGCCGAGGACTGATGAAGCAGGACTTAAGCAAGCTTGACGTGACGAAGCTCCACCCTTTATCACCTGAAGTTATCTCACGCCAGGCGACGATCAATATCGgtattgatgcaacccttttagcaatgct-tactgttatatggttaagtatta-----cagaacttatcgctgcattttttattttgtgtgttttcttatgtacaaa

upper sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgcaatctgtttaccatggttgtatggttctcggatttg-atgtcagcacacctg-atctattgatttattttgtttcttttaagttttcttatg-----------------------------------------------------
   || || |||||||| |||||  | || ||  |||| ||||| | |||  | || |||||||||||||||||||| || || || || ||||||||||||    | || ||  |   |    | | ||| |||||  || |  |  |||| |  |   ||  | | ||  ||      |      ||    | | |  ||                                                     
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgt----aagcgattaggggattccgat-gtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211366434|gb|FL064277.1|FL064277
EST:     TGACCCACTGTC-C-TGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366429|gb|FL064272.1|FL064272
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|148932915|gb|EE285716.2|EE285716
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369085|gb|FL064283.1|FL064283
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366427|gb|FL064270.1|FL064270
EST:     TGACTCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGBAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211363769|gb|FL064256.1|FL064256
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|67038206|gb|CO464536.1|CO464536
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366433|gb|FL064276.1|FL064276
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211363771|gb|FL064258.1|FL064258
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366430|gb|FL064273.1|FL064273
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369089|gb|FL064287.1|FL064287
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|148952113|gb|EC897906.2|EC897906
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211363774|gb|FL064261.1|FL064261
EST:     TGACTCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369090|gb|FL064288.1|FL064288
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369087|gb|FL064285.1|FL064285
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|58029454|gb|CX724881.1|CX724881
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366425|gb|FL064268.1|FL064268
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366421|gb|FL064264.1|FL064264
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369088|gb|FL064286.1|FL064286
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366431|gb|FL064274.1|FL064274
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|71449155|gb|DR830205.1|DR830205
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366424|gb|FL064267.1|FL064267
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369081|gb|FL064279.1|FL064279
EST:     TGACTCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|32910958|gb|CF015770.1|CF015770
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366428|gb|FL064271.1|FL064271
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211363772|gb|FL064259.1|FL064259
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366423|gb|FL064266.1|FL064266
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369086|gb|FL064284.1|FL064284
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211363773|gb|FL064260.1|FL064260
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369080|gb|FL064278.1|FL064278
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211369083|gb|FL064281.1|FL064281
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211363770|gb|FL064257.1|FL064257
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366432|gb|FL064275.1|FL064275
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
EST: gi|211366426|gb|FL064269.1|FL064269
EST:     TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTG                         GTACCATTGACCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT
genomic: TGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 133

CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 123

CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 87

CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 79

CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgc ... aatatctcagGTACCATTGGCCATGTGGCTCATGGAAAGTCTACTGTTGTGAAGGCTATATCCGGAGTTCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgcaatctgtttaccatggttgtatggttctcggatttgatgtcagcacacctgatctattgatttattttgtttcttttaagttttcttatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA