1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATGCGCCTTCAACATATCATCATTCTGCAGAACAAGATTGATCTTATCCAGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactcagtgtgcctttgcggcaccatccaatacttatcaccatctctcttgttacagtgtcttctctttcttggtctgacccttctttgctcatttgatcag
species | Zea mays |
transcript | GRMZM2G117900_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGEST: gi|32840734|gb|CD980415.1|CD980415
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTG
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32942799|gb|CF047618.1|CF047618
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32932475|gb|CF037287.1|CF037287
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTEST: gi|32935513|gb|CF040325.1|CF040325
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCT
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTEST: gi|67038206|gb|CO464536.1|CO464536
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCT
EST: GAAAGTGCAGCAATGAAATCA-CATGAAAGCA-TCCAAAAATTCATC-AG GGGACAATAGCTGAAGG-GCACCTGTGGTGC-TATATCTGCCCAGCCTGAAEST: gi|32944740|gb|CF049559.1|CF049559
genomic: -AAAGTGCAGCAATGAA-TCAACATGAA-GCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGC-TGAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCEST: gi|32940834|gb|CF045653.1|CF045653
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATC
EST: GGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|71449155|gb|DR830205.1|DR830205
genomic: GGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: GGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCTAG GAAACA-TAGCTGAAGGTGCACCTGTGGTGCCTATATCTGEST: gi|32934531|gb|CF039343.1|CF039343
genomic: GGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCC-AGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTG
EST: TGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32945952|gb|CF050771.1|CF050771
genomic: TGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCGCCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32945454|gb|CF050273.1|CF050273
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32841334|gb|CD981015.1|CD981015
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|33095600|gb|CF055594.1|CF055594
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32941656|gb|CF046475.1|CF046475
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: GGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAAEST: gi|32943977|gb|CF048796.1|CF048796
genomic: GGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgatcagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCTGCCCAGCTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCGCCTTCAACATATCATCATTCTGCAGAACAAGATTGATCTTATCCAGGAAAGTGCAGCAATGAATCAACATGAAGCAATCCAAAAATTCATCCAGgtcaatactcagtgtgcctttgcggcaccatccaatacttatcaccatctctcttgttacagtgtcttctctttcttggtctgacccttctttgctcatttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA