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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCATCTACTGCGACAAGGAGGGGCAGTCCGGCACCCAGGCCTTCGTCAAGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacgaatggtaacccacccctttgttttggttgttgcattagcactcgagcgcacattaaactgttggtcgagcgagcagcacgcatgtcgctg...

Basic information

species Zea mays
transcript GRMZM2G106165_T01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40335821|gb|CK369891.1|CK369891
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|71429064|gb|DR810114.1|DR810114
EST:     AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|149108722|gb|EE189800.2|EE189800
EST:     AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|4776526|gb|AI665529.1|AI665529
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|78026508|gb|DV494895.1|DV494895
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|37387560|gb|CF630977.1|CF630977
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|44901511|gb|CK828056.1|CK828056
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|211220330|gb|FL435584.1|FL435584
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|113703586|gb|EE681090.1|EE681090
EST:     AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|148953880|gb|EC899258.2|EC899258
EST:     AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: gi|148949599|gb|EC895070.2|EC895070
EST:     AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG                         GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCATCTACTGCGACAAGGAGGGGCAGTCCGGCACCCAGGCCTTCGTCAAGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacgaatggtaacccacccctttgttttggttgttgcattagcactcgagcgcacattaaactgttggtcgagcgagcagcacgcatgtcgctg

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