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...tggaacaaaaagatttaaatgttttttgcataagatggccagatggagtacttactaatgttccacttcctgtcttgatgctgatggcaacaatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGCGATCTCCTGCCGAGTAGCAGGAGGAAGAAAACAAGGCGACGGAATGGA
species | Zea mays |
transcript | GRMZM2G106165_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|71429064|gb|DR810114.1|DR810114
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|149108722|gb|EE189800.2|EE189800
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|4776526|gb|AI665529.1|AI665529
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|78026508|gb|DV494895.1|DV494895
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|37387560|gb|CF630977.1|CF630977
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|44901511|gb|CK828056.1|CK828056
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|211220330|gb|FL435584.1|FL435584
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|113703586|gb|EE681090.1|EE681090
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|148953880|gb|EC899258.2|EC899258
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGEST: gi|148949599|gb|EC895070.2|EC895070
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
EST: AGTCCTACAAGAACCTCAATTTTTACTGGATACTCGAAGCCGGACACATG GTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
genomic: AGTCCTACAAGAACCTCAATTTCTACTGGATACTCGAAGCCGGACACATGgtaattaacg ... caatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACG
gagtacttactaatgttccacttcctgtcttgatgctgatggcaacaatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGCGATCTCCTGCCGAGTAGCAGGAGGAAGAAAACAAGGCGACGGAATGGA
ttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaacaaaaagatttaaatgttttttgcataagatggccagatggagtacttactaatgttccacttcctgtcttgatgctgatggcaacaatggacagGTACCCCTGGACAACCCTTGCCCTGCGCTCAAGATGCTGGCTGACATTACGCGATCTCCTGCCGAGTAGCAGGAGGAAGAAAACAAGGCGACGGAATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA