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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCATGGCGGCGTCTTCGTCGTCGTCAGCAGGCGGCTTCGACGGGCTCATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggccgccatgcttggctttccacaaatttcgattgctgagacagagagggagcgaaccattatcgtcgacggatggtgtaccataccatacacaagaaaggtcaagctagttaggaatgactagaatgtatgtgtgcctgcag

Basic information

species Zea mays
transcript GRMZM2G106165_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14245564|gb|BG874146.1|BG874146
EST:     ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
genomic: ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
EST: gi|149108722|gb|EE189800.2|EE189800
EST:     ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
genomic: ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
EST: gi|148978996|gb|EE026423.2|EE026423
EST:     ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCCTCTGGCTGGAGACTTCA
genomic: ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGC-TCTGGCTGGAGACTTCA
EST: gi|78026508|gb|DV494895.1|DV494895
EST:     ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
genomic: ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
EST: gi|113703586|gb|EE681090.1|EE681090
EST:     ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
genomic: ATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
EST: gi|148953880|gb|EC899258.2|EC899258
EST:     AGAAGAAGCTGGGCATCATCCCAAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
genomic: AGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
EST: gi|148949599|gb|EC895070.2|EC895070
EST:     AAAGGATCTCAA                         GTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT
genomic: AAAGGATCTCAAgtaggccggc ... gtgcctgcagGTGGGGAGAGCAGTCAGACGACGTGTTCGATGCTCTGGCTGGAGACTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCCATGGCGGCGTCTTCGTCGTCGTCAGCAGGCGGCTTCGACGGGCTCATGAACACGGTCATCAAGAAGAAGCTCGGCATCATCCCAAAGGATCTCAAgtaggccggccgccatgcttggctttccacaaatttcgattgctgagacagagagggagcgaaccattatcgtcgacggatggtgtaccataccatacacaagaaaggtcaagctagttaggaatgactagaatgtatgtgtgcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC