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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcacgcgcgcgccatacataccaccatgaccgtaccgtactccctttatgctgcatattgcctacactgaatgctactgctgttacaatgcagAACTTCTACAACTTTCTCAAGGACGAGGCGTCGGGGGACGCCACCGCCACTGCCACAGCGGCGGTGTCGACACTGGCGTCCTTCAGGCGCCGGGGCGGCT

Basic information

species Zea mays
transcript GRMZM2G106165_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14245564|gb|BG874146.1|BG874146
EST:     CCTCGTGGTCGGAGCTGGAGGGCGTCGTCCTCGCCAGCTCCAACTCCGTC                         AACTTCTACAACTTTCTCAAGGACGAGGCGTCGGGGGACGCCACCGCCACT
genomic: CCTCGTGGTCGGAGCTGGAGGGCGTCGTCCTCGCCAGCTCCAACTCCGTCgtacgcacgc ... tacaatgcagAACTTCTACAACTTTCTCAAGGACGAGGCGTCGGGGGACGCCACCGCCACT
EST: gi|148978996|gb|EE026423.2|EE026423
EST:     CCTCGTGGTCGGAGCTGGAGGGCGTCGTCCTCGCCAGCTCCAACTCCGTC                         AACTTCTACAACTTTCTCAAGGACGAGGCGTCGGGGGACGCCACCGCCACT
genomic: CCTCGTGGTCGGAGCTGGAGGGCGTCGTCCTCGCCAGCTCCAACTCCGTCgtacgcacgc ... tacaatgcagAACTTCTACAACTTTCTCAAGGACGAGGCGTCGGGGGACGCCACCGCCACT
EST: gi|32827593|gb|CD967271.1|CD967271
EST:     CCTCGTGGTCGGAGCTGGAGGGCGTCGTCCTCGCCAGCTCCAACTCCGTC                         AACTTCTACAACTT
genomic: CCTCGTGGTCGGAGCTGGAGGGCGTCGTCCTCGCCAGCTCCAACTCCGTCgtacgcacgc ... tacaatgcagAACTTCTACAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actccctttatgctgcatattgcctacactgaatgctactgctgttacaatgcagAACTTCTACAACTTTCTCAAGGACGAGGCGTCGGGGGACGCCACCGCCACTGCCACAGCGGCGGTGTCGACACTGGCGTCCTTCAGGCGCCGGGGCGGCT
                                            ttacaat  TA-rich tract