1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctgagttactttgcagttgaatgcaagtatggactaggtgaattatatcagatcctatttctgatttgttattccccccttcttttcttgttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGATATTGAAGTTGTGGCTGTGAATGACCCTTTCATTGATGCTAAGTACAT
species | Zea mays |
transcript | GRMZM2G104632_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGEST: gi|15632381|gb|BI679474.1|BI679474
genomic: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
EST: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGEST: gi|6564069|gb|AW231691.1|AW231691
genomic: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
EST: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGEST: gi|32799643|gb|CD951879.1|CD951879
genomic: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
EST: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGEST: gi|28987666|gb|CB351748.1|CB351748
genomic: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
EST: ATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGEST: gi|32796951|gb|CD949187.1|CD949187
genomic: ATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
EST: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGEST: gi|91869745|gb|EB400519.1|EB400519
genomic: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
EST: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACG GGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
genomic: AATATTCGAGTGGGGAGAAGACAAAGATTGGCATCAACGgtgagttctt ... gttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATG
atatcagatcctatttctgatttgttattccccccttcttttcttgttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGATATTGAAGTTGTGGCTGTGAATGACCCTTTCATTGATGCTAAGTACAT
ttctgat putative branch site (score: 430)
tttctgatttgttatt CT-rich tract
atttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgagttactttgcagttgaatgcaagtatggactaggtgaattatatcagatcctatttctgatttgttattccccccttcttttcttgttactgtagGGTTTGGGCGGATTGGCAGGTTGGTCCTGCGAATTGCAACCAGCAGAGATGATATTGAAGTTGTGGCTGTGAATGACCCTTTCATTGATGCTAAGTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -ctttgca
- - - - - - - - - tgaatgc